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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42696829_42698840_F

Intron Information:

Intron Rank:
146936
Intron Class:
major
Intron Phase:
Intron Coordinates:
42696829 - 42698840
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTCTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.4
0.71
0.8
77.8
29.5
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
70.6
0.64
1.5
81.1
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029135
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047924
42687604 - 42699283
11680
ENSAPLT00000040145
42695957 - 42699283
3327
ENSAPLT00000033820
42695096 - 42698880
3785