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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4275703_4280327_R

Intron Information:

Intron Rank:
24
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
4275703 - 4280327
Intron Length:
4625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TGTTCTTCCTAAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ATGTCCTTAACT
Flanking Amino Acid:
LLVVDIRNSEDFNRGHISGS
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
50.4
41.8
Major BPS
74.1
0.6
1
69
38.9
Major PPT
71.2
0.48
1
75.7
33.1
Minor 5ss
89.5
1.33
1
80.9
33.1
Minor BPS
88.7
1.29
0.9
94.62
32.4

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616