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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4280504_4296009_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4280504 - 4296009
Intron Length:
15506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCACCTTTAATA
Flanking Amino Acid:
DYQEAPRSDLSRDSIKLDDL
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.7
0.6
1
77.7
28.5
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
68.4
0.57
1.2
69.35
37.3

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616