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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42883407_42887695_R

Intron Information:

Intron Rank:
151357
Intron Class:
major
Intron Phase:
Intron Coordinates:
42883407 - 42887695
Intron Length:
4289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80.8
0.69
0.8
80.7
31.3
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028981
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047563
42883199 - 42888473
5275