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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42915237_42921138_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42915237 - 42921138
Intron Length:
5902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTCTTAAG
Flanking Amino Acid:
KDKKAKPKPSKPPAIAVRPG
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.7
0.73
0.9
87.8
22.9
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
48.8
-0.2
2.1
65.45
42

Associated Gene:

Gene:
GABRG1
Ensembl Gene ID:
ENSAPLG00000015591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020749
42914958 - 42968956
53999
ENSAPLT00000016265
42914958 - 42969695
54738