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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42948678_42969603_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
42948678 - 42969603
Intron Length:
20926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CACTCACCATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
LLLLTVRLGSGADKADDEDD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.4
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.1
0.21
0.9
56.7
33.4
Minor 5ss
30.2
-2.3
2.5
26.6
35.9
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
GABRG1
Ensembl Gene ID:
ENSAPLG00000015591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016265
42914958 - 42969695
54738