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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4296186_4311964_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4296186 - 4311964
Intron Length:
15779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
AATCCTTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTAAAT
Flanking Amino Acid:
ECILLFSDLPEIDIERCVRE
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
64.6
0.33
1.1
63.2
42
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
85.3
1.19
1.1
97.3
26.5

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616