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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43010801_43020019_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43010801 - 43020019
Intron Length:
9219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATCCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCC
Flanking Amino Acid:
RESVPARTVFGVTTVLTMTT
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
83.5
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
0.8
73.1
31.4
Minor 5ss
34.3
-1.8
2.8
43.1
43.9
Minor BPS
65.5
0.47
1.5
74.31
36.6

Associated Gene:

Gene:
GABRA2
Ensembl Gene ID:
ENSAPLG00000015376
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016063
43009776 - 43065206
55431