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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43020173_43021161_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43020173 - 43021161
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGGCACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTTCATT
Flanking Amino Acid:
IGKETVKSSTGEYTVMTAHF
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
60.4
0.23
0.9
56.1
40
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
60.6
0.42
1.7
78.3
39.3

Associated Gene:

Gene:
GABRA2
Ensembl Gene ID:
ENSAPLG00000015376
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016063
43009776 - 43065206
55431