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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43021306_43024177_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43021306 - 43024177
Intron Length:
2872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTATTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATATCTTATTT
Flanking Amino Acid:
AHSCPLKFGSYAYTTSEVTY
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.9
0.72
0.8
77
31.5
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
62
0.45
1.6
77.48
39.1

Associated Gene:

Gene:
GABRA2
Ensembl Gene ID:
ENSAPLG00000015376
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016063
43009776 - 43065206
55431