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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43037560_43061378_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43037560 - 43061378
Intron Length:
23819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTACTTTATTT
Flanking Amino Acid:
YDNRLRPGLGDSITEVFTNI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.9
85.8
33.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
63
0.49
1.6
78.87
37.7

Associated Gene:

Gene:
GABRA2
Ensembl Gene ID:
ENSAPLG00000015376
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016063
43009776 - 43065206
55431