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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43061495_43064063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43061495 - 43064063
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
AATATCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAAAT
Flanking Amino Acid:
LLVLLVWLPTRSVLADSLED
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
64.3
0.32
1
60.6
40.7
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
58.8
0.35
1.8
74.89
42

Associated Gene:

Gene:
GABRA2
Ensembl Gene ID:
ENSAPLG00000015376
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016063
43009776 - 43065206
55431