Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43064153_43064903_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

43064153 - 43064903

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTTTGTCGT

5'SS Class:

weak_major

3'SS Sequence:

CTTGCACCGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGCAC

U12 Branch Point Sequence:

TTTTCTTGCACC

Flanking Amino Acid:

ERPRRATQSAVLQRAAMKRK

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.8

0.07

1.3

50.8

45.4

Major BPS

52.8

0.07

1.4

66.7

39.9

Major PPT

61.3

0.25

59.6

37.1

Minor 5ss

41.3

-1

2.8

61.3

Minor BPS

62.6

0.38

1.9

79.01

36.5

Associated Gene:

Gene:

GABRA2

Ensembl Gene ID:

ENSAPLG00000015376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016063

43009776 - 43065206

55431