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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43071958_43076706_R

Intron Information:

Intron Rank:
136455
Intron Class:
major
Intron Phase:
Intron Coordinates:
43071958 - 43076706
Intron Length:
4749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020832
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048487
43067966 - 43078021
10056