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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43078053_43088406_R

Intron Information:

Intron Rank:
136452
Intron Class:
major
Intron Phase:
Intron Coordinates:
43078053 - 43088406
Intron Length:
10354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTCAGGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.7
0.62
0.8
69.7
35.6
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
48.3
-0
2.3
75.52
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020832
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041428
43076208 - 43095376
19169