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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4312127_4313549_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4312127 - 4313549
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GTTTGTCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATCTATTTATT
Flanking Amino Acid:
AIPWFLTMFTHVFPLHKIFH
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
1
70.3
40.4
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
49.2
0.02
1.9
71.42
39.5

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616