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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4313587_4320506_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4313587 - 4320506
Intron Length:
6920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCACCTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CTCCCCCCACCT
Flanking Amino Acid:
HLNDIGFIPDLYAIPWFLTM
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
77.9
0.63
0.8
71.9
32.3
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
43.7
-0.4
2.1
62.31
47.2

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616