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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43191091_43206476_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43191091 - 43206476
Intron Length:
15386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TGTAACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTTTGTAACT
Flanking Amino Acid:
REKSTEETVTSTDANSNVRK
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.6
36.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
77
0.61
0.9
69.7
41.1
Minor 5ss
51.7
0.06
2.8
74.3
41.9
Minor BPS
69.1
0.68
2
90.89
33.1

Associated Gene:

Gene:
GABRA4
Ensembl Gene ID:
ENSAPLG00000011884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027184
43190557 - 43228991
38435
ENSAPLT00000021853
43190557 - 43228991
38435
ENSAPLT00000012365
43190557 - 43228991
38435