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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43213806_43215577_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43213806 - 43215577
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TGCTGTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGCAAACT
Flanking Amino Acid:
GHACPLKFGSYAYPKSEMIY
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71
0.47
1
65.1
41.2
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
43.9
-0.3
2.5
72.74
44.1

Associated Gene:

Gene:
GABRA4
Ensembl Gene ID:
ENSAPLG00000011884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027184
43190557 - 43228991
38435
ENSAPLT00000021853
43190557 - 43228991
38435
ENSAPLT00000012365
43190557 - 43228991
38435