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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43215661_43215762_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43215661 - 43215762
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTAGC
5'SS Class:
major
3'SS Sequence:
TGTTCCATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GACTATTTAATT
Flanking Amino Acid:
MRNGTILYTMRLTISAECPM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
68.8
42.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.4
0.6
0.8
70.3
35
Minor 5ss
47.7
-0.2
2.3
63.5
40.9
Minor BPS
60.9
0.42
1.5
70.68
40.5

Associated Gene:

Gene:
GABRA4
Ensembl Gene ID:
ENSAPLG00000011884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012365
43190557 - 43228991
38435