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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43215984_43218480_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43215984 - 43218480
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTGCAATT
Flanking Amino Acid:
SFGPVSDVEMEYTMDVFFRQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69
0.43
1
62.6
41.8
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
57.4
0.31
2.2
83.73
37.9

Associated Gene:

Gene:
GABRA4
Ensembl Gene ID:
ENSAPLG00000011884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027184
43190557 - 43228991
38435
ENSAPLT00000021853
43190557 - 43228991
38435
ENSAPLT00000012365
43190557 - 43228991
38435