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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43246746_43246859_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43246746 - 43246859
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGCAT
U12 Branch Point Sequence:
GCTCCCGCATCC
Flanking Amino Acid:
YDIRLRPDFGGPPVGVGMRI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
48
-0.1
1.4
56.9
40.5
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
41.5
-0.6
2.3
52.83
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011813
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012291
43246348 - 43377391
131044