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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4326655_4327928_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4326655 - 4327928
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTCTTCCACA
Flanking Amino Acid:
ITWAALLGVEGAIQAKYDAI
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.9
0.45
0.9
67.3
33.1
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
56.4
0.2
2
72.71
39.3

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616