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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43319437_43348159_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43319437 - 43348159
Intron Length:
28723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
CCTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTCCTGATTT
Flanking Amino Acid:
HPDGTVLYGLRITTTAACMM
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.8
40.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.1
0.72
0.7
76.1
25.9
Minor 5ss
48.5
-0.1
2.5
67.1
44
Minor BPS
65.3
0.56
1.7
83.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011813
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012291
43246348 - 43377391
131044