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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4335777_4337057_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4335777 - 4337057
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGGTCTTCAACT
Flanking Amino Acid:
AERLKFIIMLGCVDDIVTVL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
68.6
0.66
1.5
81
40.7

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616