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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_433636_437076_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
433636 - 437076
Intron Length:
3441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
TTGACCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GTATCCTTACCT
Flanking Amino Acid:
EEEQQYQQCQALLPDDLRTL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
37.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
80.5
0.69
0.9
77.3
36.8
Minor 5ss
32.1
-2
3.2
34
41.8
Minor BPS
73.5
0.82
1.6
85.91
39.8

Associated Gene:

Gene:
ALPK1
Ensembl Gene ID:
ENSAPLG00000013490
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038111
420710 - 460307
39598
ENSAPLT00000014057
421131 - 460307
39177
ENSAPLT00000014051
420456 - 460307
39852