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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43370598_43371379_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43370598 - 43371379
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCCAACTAAATG
Flanking Amino Acid:
KSRLETTRVQQPHHCCASCS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81.2
0.7
0.9
72.6
42.4
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
45.8
-0.4
1.9
48.4
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011813
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025460
43368883 - 43371610
2728