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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4338468_4339174_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4338468 - 4339174
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TATTACTTAATG
Flanking Amino Acid:
AQGVDVDFPIGYPSYLAPEV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
75.9
0.58
0.9
73.4
37
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
72.1
0.55
1.5
73.87
38.3

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616