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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43406946_43411944_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43406946 - 43411944
Intron Length:
4999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
TGTTTCTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATTACTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.1
35.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70
0.45
1
67.2
38.3
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
79.9
0.92
1.4
85.15
32.4

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011797
43406675 - 43443871
37197