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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43412250_43412986_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43412250 - 43412986
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
ACACAGCTAACT
Flanking Amino Acid:
IPRNLFEQFHRVANLYFLFL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
41.4
-0.5
2.3
58.79
43.5

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017750
43411945 - 43443685
31741
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037