About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43413182_43416475_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43413182 - 43416475
Intron Length:
3294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATATGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAATT
Flanking Amino Acid:
INNLLTKVYSRKEKKYIDEC
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.2
0.5
1
67.5
42.8
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
61.2
0.43
1.8
78.37
37.2

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017750
43411945 - 43443685
31741
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037