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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43421806_43422752_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43421806 - 43422752
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTATTT
Flanking Amino Acid:
LILMCLTGAVGHGIWLSRYS
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
76.5
0.6
1
74.9
39
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
52.7
0.16
1.9
73.79
43.2

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741
ENSAPLT00000011797
43406675 - 43443871
37197