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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43425900_43426755_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43425900 - 43426755
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTAATCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTGTTTAATC
Flanking Amino Acid:
AGHVAFSSRIETDVVPDTQL
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
63.7
0.31
1
58.9
41.9
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
71.7
0.66
1.7
81.67
33.1

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741
ENSAPLT00000011797
43406675 - 43443871
37197