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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43431617_43433469_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43431617 - 43433469
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTAAATTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTTGTCTAAATT
Flanking Amino Acid:
IRLETKLTLLGATGIEDRLQ
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
59.8
0.22
1.2
62.6
41.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
64.3
0.53
1.7
82.74
39.5

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000040724
43409649 - 43443685
34037