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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43437004_43437482_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43437004 - 43437482
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
ATTAACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATCATTAACT
Flanking Amino Acid:
MVLYFFYKNVAYVNLLFWYQ
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
0.9
74.2
40.4
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
74.6
0.85
1.6
86.33
39.2

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741