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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43439276_43439521_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43439276 - 43439521
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATGTATTTAACT
Flanking Amino Acid:
SLVCFFVPYFTYYGSDIDIF
Intron Amino Acid Position:
1212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
71.5
38.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.4
0.82
0.7
80.2
25.2
Minor 5ss
36.9
-1.5
3.3
51.3
39.7
Minor BPS
71.5
0.75
1.4
83.28
37.7

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000011797
43406675 - 43443871
37197