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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43439627_43440646_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43439627 - 43440646
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
LHLLIECKSVTWIHAVVIVG
Intron Amino Acid Position:
1247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
70.5
38.9
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741