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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43440835_43443213_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43440835 - 43443213
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTATTTGAAAT
Flanking Amino Acid:
LLTTCVALLPRYLLRVLQGT
Intron Amino Acid Position:
1309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.3
0.73
0.8
77.5
36.5
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
52.1
0.14
1.6
70.27
40.6

Associated Gene:

Gene:
ATP10D
Ensembl Gene ID:
ENSAPLG00000011330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011797
43406675 - 43443871
37197
ENSAPLT00000040724
43409649 - 43443685
34037
ENSAPLT00000039835
43409649 - 43443685
34037
ENSAPLT00000017750
43411945 - 43443685
31741