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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43451074_43451630_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43451074 - 43451630
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGATA
Flanking Amino Acid:
YESGTVDSCMGDSGGPLVCE
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.6
0.69
0.9
74.3
39.8
Minor 5ss
42.6
-0.8
3.1
56.9
41.9
Minor BPS
80.9
0.97
0.9
85.86
25.8

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938