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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43451765_43453075_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43451765 - 43453075
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAATGCTTAATT
Flanking Amino Acid:
ITGWGHMGNKMPFKLQEGEV
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
69.2
0.68
1.7
82.12
39.3

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906