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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43457669_43460430_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43457669 - 43460430
Intron Length:
2762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTCAATATTT
Flanking Amino Acid:
ASTLHALLVNGQICRSRSKV
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.3
0.52
0.9
71.3
38.6
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
49
0
2.1
75.23
41.2

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938