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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43460554_43471451_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43460554 - 43471451
Intron Length:
10898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTCTTTTATCT
Flanking Amino Acid:
SQLACNQMGLGGPPTTEIVL
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.3
38
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.74
0.9
80.9
36.4
Minor 5ss
36.6
-1.5
3.2
39.6
45.9
Minor BPS
61.1
0.43
1.6
77.62
38.8

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176