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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43471582_43473175_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43471582 - 43473175
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
CSDSSDEWDCVTLSKNMNSL
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938