Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43473287_43475243_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43473287 - 43475243

Intron Length:

1957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGGGTT

5'SS Class:

major

3'SS Sequence:

TTCTTCCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

TCAGTGTGAACT

Flanking Amino Acid:

CPDMMDEKNCSFCEEHELEC

Intron Amino Acid Position:

719

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

70.2

40.1

Major BPS

0.52

1.5

79.6

35.6

Major PPT

89.5

0.89

0.6

84.7

Minor 5ss

38.1

-1.3

3.9

65.3

45.9

Minor BPS

46.1

-0.2

2.2

64.75

45.7

Associated Gene:

Gene:

CORIN

Ensembl Gene ID:

ENSAPLG00000010874

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011343

43450891 - 43563828

112938

ENSAPLT00000047075

43450891 - 43577796

126906

ENSAPLT00000045014

43450891 - 43562066

111176

ENSAPLT00000044514

43450891 - 43577796

126906