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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43475358_43479417_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43475358 - 43479417
Intron Length:
4060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
TATCTACCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCAAAACT
Flanking Amino Acid:
CEDDSDEDSCGCGERGLWEC
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73
37.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.9
0.42
1
60.8
40.1
Minor 5ss
34.6
-1.8
2.8
38.6
40.9
Minor BPS
59.1
0.36
1.9
81.79
39.5

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938