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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43479526_43481788_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43479526 - 43481788
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCTTGTTATT
Flanking Amino Acid:
TCLTPDEGVEECSPSHFKCR
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.6
0.6
1
73.8
40.8
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
46.5
-0.2
2.2
72.15
39.3

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906