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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43481935_43487693_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43481935 - 43487693
Intron Length:
5759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
TGTGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAACT
Flanking Amino Acid:
PNTNHRIPPCRTLCVQSKER
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
76.6
0.6
0.9
73.7
36.9
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
78.9
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906