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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43487926_43492813_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43487926 - 43492813
Intron Length:
4888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
ATTTTTGTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
CGMKNSQINCSQCEPITLEL
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.4
41.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.6
0.33
1.2
67.3
42.4
Minor 5ss
38.2
-1.3
2.7
49.6
40.1
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906