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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43507718_43520162_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43507718 - 43520162
Intron Length:
12445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TCCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAAAGTTTAATA
Flanking Amino Acid:
FSPYQEKGKQSLCGGEESFL
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
52.6
0.08
1.8
61.94
38.4

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906
ENSAPLT00000011343
43450891 - 43563828
112938