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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43520345_43537306_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43520345 - 43537306
Intron Length:
16962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGGA
5'SS Class:
major
3'SS Sequence:
CTCTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTTTTTATCT
Flanking Amino Acid:
LPECISDGDDSQSLLPCRTF
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.4
0.84
0.7
80.3
31.8
Minor 5ss
38.2
-1.3
3.1
50
46.2
Minor BPS
61.4
0.44
1.6
74.38
43.4

Associated Gene:

Gene:
CORIN
Ensembl Gene ID:
ENSAPLG00000010874
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011343
43450891 - 43563828
112938
ENSAPLT00000047075
43450891 - 43577796
126906
ENSAPLT00000045014
43450891 - 43562066
111176
ENSAPLT00000044514
43450891 - 43577796
126906